File:Dimer-Formation-Enhances-Structural-Differences-between-Amyloid-β-Protein-(1–40)-and-(1–42)-An-pone.0034345.s012.ogv
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DescriptionDimer-Formation-Enhances-Structural-Differences-between-Amyloid-β-Protein-(1–40)-and-(1–42)-An-pone.0034345.s012.ogv |
English: A Dimer Animation. Animation of representative fully atomistic A dimer simulation with OPLS-AA force field and TIP3P water model. In total, frames separated by 50 ps were extracted from the 50 ns MD trajectories for each dimer and rendered using the the VMD package. The final animations were encoded at 30 frames/second. Atoms are shown in van der Waals representation. Individual peptides are shown in green and blue, respectively, and N-terminal D1 amino acids are depicted in red. |
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Source | Movie S1 from Barz B, Urbanc B (2012). "Dimer Formation Enhances Structural Differences between Amyloid β-Protein (1–40) and (1–42): An Explicit-Solvent Molecular Dynamics Study". PLOS ONE. DOI:10.1371/journal.pone.0034345. PMID 22509291. PMC: 3324527. | ||
Author | Barz B, Urbanc B | ||
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Date/Time | Thumbnail | Dimensions | User | Comment | |
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current | 16:42, 19 November 2012 | 33 s, 610 × 626 (10.45 MB) | Open Access Media Importer Bot (talk | contribs) | Automatically uploaded media file from Open Access source. Please report problems or suggestions here. |
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Author | Barz B, Urbanc B |
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Usage terms | http://creativecommons.org/licenses/by/3.0/ |
Image title | A Dimer Animation. Animation of representative fully atomistic A dimer simulation with OPLS-AA force field and TIP3P water model. In total, frames separated by 50 ps were extracted from the 50 ns MD trajectories for each dimer and rendered using the the VMD package. The final animations were encoded at 30 frames/second. Atoms are shown in van der Waals representation. Individual peptides are shown in green and blue, respectively, and N-terminal D1 amino acids are depicted in red. |
Software used | Xiph.Org libtheora 1.1 20090822 (Thusnelda) |
Date and time of digitizing | 2012 |