File:Flickr-Streptomycin.png

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Streptomycin data chart

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DescriptionFlickr-Streptomycin.png	English: This chart shows a phylogenetic tree of strains of streptomycin
Date	9 May 2014
Source	https://www.flickr.com/photos/123636286@N02/13956524470
Author	Flickr

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Source	info:doi/10.1371/journal.pntd.0002557
Headline	Figure 1
Image title	Phylogenetic tree of S. Bovismorbificans isolates and visualization of the Bovismorbificans pangenome.Maximum likelihood phylogenetic tree of S. Bovismorbificans isolates (left), Bootstrapping values below 100% are shown and branch length corresponds to SNPs, proportional to the shown scale (left). Colour-coded information on each strain follows to the right, including origin (A = Adult, C = Child, V = Veterinary), year of isolation (an exact date of isolation for the veterinary isolates is not known (ND) but the collection predates the 1980s), ST, antimicrobial resistance profile (RL = sulphamethoxazole, CXM = cefuroxime, RD = rifampicin, amoxicillin (AML), gentamicin (CN), trimethoprim (W), chloramphenicol (C), tetracycline (TET), streptomycin (S)) and presence or absence of the virulence plasimd pVIRBov (see key for further details, bottom). The shaded area (right) shows base positions of the pan-genome pseudomolecule (depicted above) coloured white, grey or black representing 0 (white; absent) 1–14 (grey; partially present) or 15 or more (black; present) read coverage per base for each sample. The pan-genome pseudomolecule is shown (right top) consisting of the chromosome of isolate 3114 genome (ochre shading) the virulence plasmidpVIRBov (blue shading) and concatenated accessory regions (green shading). Significant regions of variation (see methods) are marked on the pan-genome pseudomolecule: RODs 13, 14, 34 (red boxes) and SPI-7 (dark green).
Publisher	Public Library of Science
Short title	Figure 1
Copyright holder	Creative Commons Attribution License
Image width	1,998 px
Image height	1,639 px
Width	1 px
Rating (out of 5)	0
Date(s)	14 November 2013
Keywords	PLOS-NTD heatmap
Identifier	info:doi/info:doi/10.1371/journal.pntd.0002557.g001

File:Flickr-Streptomycin.png

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phylogenetics

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copyright license

Creative Commons Attribution 2.0 Generic

inception

9 May 2014

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image/png

source of file

file available on the internet