File:BBDEP Newman diagram.png
![File:BBDEP Newman diagram.png](https://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/BBDEP_Newman_diagram.png/738px-BBDEP_Newman_diagram.png?20200612091043)
Size of this preview: 738 × 600 pixels. Other resolutions: 296 × 240 pixels | 591 × 480 pixels | 945 × 768 pixels | 1,261 × 1,024 pixels | 2,521 × 2,048 pixels | 7,447 × 6,050 pixels.
Original file (7,447 × 6,050 pixels, file size: 1.56 MB, MIME type: image/png)
File information
Structured data
Captions
Captions
Steric interactions that affect the backbone-conformation-dependent rotamer preferences of amino acid side chains
Summary
editDescriptionBBDEP Newman diagram.png |
English: Backbone-conformation dependent interactions occur between gamma heavy atoms (Cγ,Oγ,Oγ1,Cγ1,Cγ2,Sγ) and backbone Ci-1 (carbonyl carbon of the previous amino acid), backbone Ni+1 (backbone nitrogen of the next amino acid), backbone Oi (backbone oxygen of the same amino acid), and the hydrogen bond donor to backbone Ni of the same amino acid ("hb" below, assuming linear hydrogen bond between oxygen and H-N bond). These interactions are expected to be strongly repulsive when dihedral angles connecting these heavy atoms to gamma heavy atoms occur in +60°,-60° or -60°,+60° pairs. They will occur in a range about the φ and ψ dihedrals that cause the connecting dihedrals to the backbone to be near +60° or -60° (when connecting dihedral to Xγ is -60° or +60° respectively). In each case, the dihedrals needed are of the form: X1-X2-X3-X4 and X2-X3-X4-X5. So for instance for ψ dependent interactions, the dihedrals are Ni+1-C-Cα-Cβ and C-Cα-Cβ-Xγ or ψ+120° and χ1-120° respectively. Interactions with "hb" are expected to be weak, but the backbone-dependent rotamer library does exhibit effects due to this interaction. |
Date | |
Source | Own work |
Author | Roland Dunbrack |
Licensing
editI, the copyright holder of this work, hereby publish it under the following license:
![w:en:Creative Commons](https://upload.wikimedia.org/wikipedia/commons/thumb/7/79/CC_some_rights_reserved.svg/90px-CC_some_rights_reserved.svg.png)
![attribution](https://upload.wikimedia.org/wikipedia/commons/thumb/1/11/Cc-by_new_white.svg/24px-Cc-by_new_white.svg.png)
![share alike](https://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Cc-sa_white.svg/24px-Cc-sa_white.svg.png)
This file is licensed under the Creative Commons Attribution-Share Alike 4.0 International license.
- You are free:
- to share – to copy, distribute and transmit the work
- to remix – to adapt the work
- Under the following conditions:
- attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
- share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible license as the original.
File history
Click on a date/time to view the file as it appeared at that time.
Date/Time | Thumbnail | Dimensions | User | Comment | |
---|---|---|---|---|---|
current | 09:10, 12 June 2020 | ![]() | 7,447 × 6,050 (1.56 MB) | Math-ghamhainn (talk | contribs) | Uploaded own work with UploadWizard |
You cannot overwrite this file.
File usage on Commons
The following page uses this file:
- File:BBDEP Newmain diagram.png (file redirect)
File usage on other wikis
The following other wikis use this file:
- Usage on en.wikipedia.org
Metadata
This file contains additional information such as Exif metadata which may have been added by the digital camera, scanner, or software program used to create or digitize it. If the file has been modified from its original state, some details such as the timestamp may not fully reflect those of the original file. The timestamp is only as accurate as the clock in the camera, and it may be completely wrong.
Image width | 8,400 px |
---|---|
Image height | 6,300 px |
Horizontal resolution | 236.22 dpi |
Vertical resolution | 236.22 dpi |