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File:Covid-19 cases in Finland by municipality, weeks 11-12, 2021.svg

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Covid-19 cases in Finland by municipality, week 11, 2021

Summary

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Description
English: Covid-19 cases in Finland by municipality, weeks 11-12, 2021
Date
Source Own work
Author Merikanto
SVG development
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Source of data is THL open data.

Varmistetut koronatapaukset Suomessa (COVID-19)

https://thl.fi/fi/tilastot-ja-data/aineistot-ja-palvelut/avoin-data/varmistetut-koronatapaukset-suomessa-covid-19-

https://sampo.thl.fi/pivot/prod/api/epirapo/covid19case.json

Source of population data is Sotka population data or csv file processed from Sotka.

Code to generate data.

  3. Incidence of Covid-19 in Finland during weeks 11-12, 2021
    1. "R" script, map of incidence/100 000 as/14 days
    1. Uses THL cube 06/2021 and geofi
    2. sotka population data
    3. and optionally municip. population file
  6. 18.6.2021 0000.0009

library(geofi) library(ggplot2) library(svglite) library(rjstat) library(stringr)

library(dplyr) library(tidyr)


vuosi=2021 viikko=11

widthi=10 heighti=16

  1. tulosfilee1="finmap1.svg"


viikotjono=paste0( toString(viikko),"-",toString(viikko+1) )

tulosfilee1=paste0("Koronan_ilmaantuvuus_2021_viikoilla_",viikotjono,".svg")



    1. Sotka population data

fileurl1="https://sotkanet.fi/sotkanet/fi/csv?indicator=sza0BQA=&region=VVC7CgMxDPujgB_hOPwdXW7xUOja_99qS7kjJSA7kuLYDh2a4ho6JNXi3SGOQg_rXIwxTmDbLOaf7kOK147pspziMkX7gDeGsoO8P1zISr7fOn-qaqdGGWwa-a2KU9gerbKMDt7YyoEpiLTWRCXW8x6onXt7n8a5-jIuyrd1ECmDn-zXxt0sHCeGD__mhQ2-fg==&year=sy5zBAA=&gender=t&abs=f&color=f&buildVersion=3.0-SNAPSHOT&buildTimestamp=202103120740&order=G"

kuntadata <- read.table(fileurl1, sep=";", header=F)

head(kuntadata)

kunnat=kuntadata$V3 vaestot=kuntadata$V7

vakiluvut.df<-data.frame(kunnat, vaestot)

names(vakiluvut.df) <-c("nimi", "vaesto")

head(vakiluvut.df)

    1. vakiluvut.df <- read.table("kunnat.csv", sep=";", header=T)
  2. head(vakiluvut.df)


url_base <- "https://sampo.thl.fi/pivot/prod/fi/epirapo/covid19case/fact_epirapo_covid19case.json" request <- "?row=hcdmunicipality2020-445268L&column=dateweek20200101-509030" url <- paste0(url_base, request) cube <- fromJSONstat(url, naming = "label", use_factors = F, silent = T) res <- cube1 head(res, 20)


locations00<-res[,1]

  1. dateweek20200101
  2. value
  1. print(locations00)
  1. print (head(locations00))


locations11<-locations00[!duplicated(locations00)]

  1. print(head(locations11))

lenlocations11=length(locations11)

print(lenlocations11)


data_in_specific_week <- data.frame("Location","WeeklyCases")


nn=00

for (locationtosearch in locations11) { print(locationtosearch)

allfromlocation=res[grep(locationtosearch, res$hcdmunicipality2020),]

#"Vuosi 2021 Viikko 10"

vuosistring=toString(vuosi) viikkostring=toString(viikko) viikkostring2=toString(viikko+1) #print(vuosistring) #print(viikkostring)

datestring=paste0("Vuosi ",vuosistring," Viikko ",viikkostring) datestring2=paste0("Vuosi ",vuosistring," Viikko ",viikkostring2) #print(head(allfromlocation))

#print(datestring)


selected_time_location=allfromlocation[grep(datestring, allfromlocation$dateweek20200101),] selected_time_location2=allfromlocation[grep(datestring2, allfromlocation$dateweek20200101),]

weeklycases=selected_time_location$value weeklycases2=selected_time_location2$value

twoweeklycases=as.integer(weeklycases)+as.integer(weeklycases2)

print(weeklycases) print(weeklycases2) print(twoweeklycases)

newdata00 <- rbind(data_in_specific_week, c(locationtosearch, twoweeklycases))

data_in_specific_week=newdata00 


  nn=nn+1
  #if(nn>30) break

}


  1. stop(-1)


write.csv(data_in_specific_week, "./mini.csv", row.names=T)

    2. draw map


municipalities <- get_municipalities(year = vuosi, scale = 4500)

municip2<-select(municipalities ,gml_id , kunta , nimi, geom)

municipnames00<-as.data.frame(select( municipalities , nimi))

municipnames=municipnames00['nimi']

print(head(municipnames))


weekly00=read.csv("mini.csv", header = T)

weekly01 = weekly00[-1,]


names(weekly01)<-c("numbero","nimi", "tapauksia")

print (head(weekly01))


totaali0 <- merge(municip2,weekly01,by="nimi")

totaali <-merge(totaali0,vakiluvut.df, by="nimi", all=T)


tapauksia1<-as.double(totaali$tapauksia) vaesto1<-as.double(totaali$vaesto)

ilmaantuvuus0<-tapauksia1*0.0 ilmaantuvuus0<-(tapauksia1*100000.0)/vaesto1 ilmaantuvuus<-round(ilmaantuvuus0,digits=0)

print (head(totaali, 40)) len1=length(tapauksia1)


totaali$ilmaantuvuus <- ilmaantuvuus


print (head(totaali))


otsikko=paste0("Koronan ilmaantuvuus:\ntapausta/14 pv/100 000 as.,\nVuonna",toString(vuosi),", viikot ", viikotjono)


totaali$tapauksia=as.integer(totaali$tapauksia)


my_breaks = c(1,2,5,10,20,50, 100,200,300,400,600,1000)


svg(filename=tulosfilee1, width=widthi, height=heighti, pointsize=12)

ggplot(totaali) + 

 geom_sf( aes(fill =ilmaantuvuus) ) +
 geom_sf_text(aes(label = ilmaantuvuus),
              size = 7,
              face = "bold",
              color = "white") +
  labs(fill = "Ilmaantuvuus")+
 ggtitle(otsikko) +
 theme(plot.title = element_text(size = 22, face = "bold")) +
 theme(axis.text=element_text(size=15),
       axis.title=element_text(size=15,face="bold")) +
 theme(legend.key.size = unit(2, 'cm')) +
 xlab("Pituusaste")+
 ylab("Leveysaste") +
 theme ( legend.text=element_text(size=17), legend.title=element_text(size=18) ) +
 scale_fill_viridis_c(breaks = my_breaks, labels = my_breaks, option = "plasma",
                      trans = scales::pseudo_log_trans(sigma = 0.001))

dev.off()





Population data of munip.

From finnish wiki

nimi;vaesto Helsinki;656250 Espoo;293576 Tampere;241672 Vantaa;238033 Oulu;207717 Turku;194244 Jyväskylä;143400 Kuopio;120248 Lahti;120112 Pori;83676 Kouvola;81141 Joensuu;76833 Lappeenranta;72591 Hämeenlinna;67864 Vaasa;67447 Seinäjoki;64335 Rovaniemi;63618 Mikkeli;52530 Kotka;51603 Salo;51563 Porvoo;50711 Kokkola;47927 Hyvinkää;46684 Lohja;45913 Järvenpää;44722 Nurmijärvi;43895 Kirkkonummi;40158 Rauma;39037 Tuusula;38957 Kerava;37193 Kajaani;36563 Kaarina;34878 Nokia;34525 Ylöjärvi;33377 Savonlinna;32667 Kangasala;32255 Vihti;29274 Riihimäki;28757 Raasepori;27590 Imatra;25988 Raisio;24555 Raahe;24353 Sastamala;24068 Lempäälä;23877 Hollola;23246 Sipoo;21913 Tornio;21466 Siilinjärvi;21282 Iisalmi;21126 Mäntsälä;20808 Valkeakoski;20744 Kurikka;20404 Kemi;20331 Varkaus;20240 Lieto;20194 Pirkkala;19904 Jämsä;19894 Hamina;19844 Mustasaari;19481 Naantali;19454 Pietarsaari;19098 Kempele;18927 Laukaa;18824 Äänekoski;18528 Heinola;18478 Pieksämäki;17373 Forssa;16738 Akaa;16402 Janakkala;16317 Orimattila;15871 Loimaa;15790 Kauhava;15479 Uusikaupunki;15457 Ylivieska;15308 Kuusamo;15207 Parainen;15091 Kontiolahti;14914 Loviisa;14741 Lapua;14211 Kauhajoki;12989 Kankaanpää;12768 Ulvila;12724 Kalajoki;12432 Ilmajoki;12328 Liperi;12002 Maarianhamina;11718 Eura;11474 Alavus;11275 Pedersörenkunta;11187 Paimio;10960 Lieksa;10666 Nivala;10472 Hämeenkyrö;10384 Muurame;10332 Sotkamo;10301 Liminka;10243 Kauniainen;10148 Kitee;9936 Huittinen;9931 Ii;9881 Mänttä-Vilppula;9645 Närpiö;9583 Masku;9538 Nurmes;9503 Keuruu;9491 Alajärvi;9402 Eurajoki;9387 Leppävirta;9383 Hattula;9379 Lapinlahti;9331 Saarijärvi;9203 Orivesi;8987 Muhos;8917 Karkkila;8696 Somero;8623 Laitila;8472 Sodankylä;8254 Pöytyä;8219 Hausjärvi;8187 Hanko;8064 Asikkala;8049 Kuhmo;8027 Keminmaa;7993 Laihia;7985 Loppi;7848 Kiuruvesi;7832 Pudasjärvi;7760 Mynämäki;7628 Suomussalmi;7583 Uusikaarlepyy;7509 Kemijärvi;7167 Oulainen;7160 Kokemäki;6990 Suonenjoki;6931 Inari;6900 Haapajärvi;6887 Ikaalinen;6880 Harjavalta;6856 Haapavesi;6685 Säkylä;6637 Kemiönsaari;6632 Tyrnävä;6612 Iitti;6590 Outokumpu;6508 Virrat;6490 Kittilä;6424 Vöyri;6411 Pälkäne;6408 Kruunupyy;6407 Kristiinankaupunki;6405 Parkano;6352 Rusko;6339 Siuntio;6174 Viitasaari;6093 Tammela;6001 Juva;5920 Mäntyharju;5666 Luoto;5536 Ähtäri;5524 Maalahti;5464 Kannus;5409 Jomala;5393 Inkoo;5346 Kangasniemi;5296 Nakkila;5253 Siikalatva;5189 Pyhtää;5150 Pornainen;5083 Jokioinen;5057 Siikajoki;5038 Pyhäjärvi;5014 Teuva;4978 Ruokolahti;4924 Askola;4881 Sievi;4845 Hankasalmi;4764 Ilomantsi;4744 Nousiainen;4707 Joroinen;4692 Urjala;4651 Parikkala;4634 Taipalsaari;4629 Luumäki;4529 Juuka;4509 Isokyrö;4492 Vesilahti;4390 Kärkölä;4333 Tohmajärvi;4308 Joutsa;4294 Pielavesi;4292 Kaustinen;4213 Ruovesi;4203 Polvijärvi;4184 Aura;3982 Kolari;3935 Taivalkoski;3920 Pihtipudas;3918 Ylitornio;3875 Karstula;3828 Sonkajärvi;3813 Petäjävesi;3760 Ranua;3690 Uurainen;3621 Sysmä;3610 Kuortane;3537 Vieremä;3520 Salla;3429 Rantasalmi;3362 Savitaipale;3316 Pello;3304 Paltamo;3222 Heinävesi;3183 Rautjärvi;3137 Posio;3107 Virolahti;3087 Merikarvia;3067 Rautalampi;3062 Veteli;3042 Pyhäjoki;3032 Toholampi;2964 Sauvo;2957 Simo;2953 Lemi;2951 Lappajärvi;2906 Tervola;2904 Padasjoki;2858 Kaavi;2792 Vimpeli;2783 Punkalaidun;2778 Vaala;2732 Reisjärvi;2715 Perho;2697 Hartola;2642 Lapinjärvi;2626 Finström;2610 Utajärvi;2604 Konnevesi;2569 Kärsämäki;2528 Alavieska;2522 Sulkava;2471 Puolanka;2469 Tuusniemi;2435 Toivakka;2408 Evijärvi;2391 Muonio;2317 Ypäjä;2311 Karvia;2309 Vehmaa;2296 KoskiTl;2281 Hyrynsalmi;2187 Humppila;2179 Kuhmoinen;2161 Hirvensalmi;2149 Keitele;2143 Lemland;2136 Puumala;2123 Korsnäs;2066 Rääkkylä;2064 Pomarkku;2057 Lumijoki;2024 Soini;2005 Pyhäranta;1995 Marttila;1993 Vesanto;1965 Isojoki;1920 Myrskylä;1870 Miehikkälä;1852 Pukkila;1839 Saltvik;1818 Kihniö;1814 Enontekiö;1812 Juupajoki;1797 Jämijärvi;1693 Taivassalo;1657 Pertunmaa;1648 Hammarland;1603 Kinnula;1590 Pyhäntä;1587 Rautavaara;1558 Multia;1531 Tervo;1495 Siikainen;1376 Enonkoski;1368 Kannonkoski;1329 Oripää;1320 Kaskinen;1283 Kyyjärvi;1279 Ristijärvi;1240 Utsjoki;1219 Karijoki;1199 Halsua;1100 Kivijärvi;1090 Merijärvi;1084 Savukoski;1014 Sund;1012 Kustavi;955 Hailuoto;953 Eckerö;950 Pelkosenniemi;931 Lestijärvi;725 Luhanka;695 Föglö;523 Geta;519 Vårdö;460 Brändö;451 Lumparland;374 Kumlinge;307 Kökar;227 Sottunga;100

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current13:06, 18 June 2021Thumbnail for version as of 13:06, 18 June 2021900 × 1,440 (359 KB)Merikanto (talk | contribs)update
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13:21, 12 June 2021Thumbnail for version as of 13:21, 12 June 2021450 × 720 (325 KB)Merikanto (talk | contribs)Log scale of colors
13:00, 12 June 2021Thumbnail for version as of 13:00, 12 June 2021450 × 720 (322 KB)Merikanto (talk | contribs)Correct layout
12:53, 12 June 2021Thumbnail for version as of 12:53, 12 June 2021360 × 1,080 (320 KB)Merikanto (talk | contribs)Uploaded own work with UploadWizard

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