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Source: Front. Cell. Infect. Microbiol., 07 November 2012 | doi:10.3389/fcimb.2012.00133 Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli Susan R. Steyert, Jason W. Sahl, Claire M. Fraser, Louise D. Teel Flemming Scheutz and David A. Rasko Figure 1. A whole genome phylogeny of nine LEE-negative (red) and four LEE-positive (blue) STEC compared in this study. Whole genome sequences for the LEE-negative STEC sequenced in this study (indicated by asterisks) was combined with sequence data obtained from GenBank for E. coli/Shigella genomes representing the major pathotypes (Table A1 in Appendix), and aligned based on concatenated regions of shared sequence as determined from analysis using Mugsy (Angiuoli and Salzberg, 2011). The phylogenetic tree was inferred with E. fergusonii isolate 35469 as the outgroup. |
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Source | fcimb-02-00133-g001 |
Author | Phylogeny Figures |
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19 December 2020
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Author | David Rasko |
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Date and time of data generation | 17:51, 21 July 2012 |
Short title | Microsoft Word - Steyert_manuscript_revision_07212012_Cleaned.do |
Orientation | Normal |
Horizontal resolution | 300 dpi |
Vertical resolution | 300 dpi |
Software used | Shotwell 0.18.0 |
File change date and time | 17:51, 21 July 2012 |
Date and time of digitizing | 17:51, 21 July 2012 |
Color space | sRGB |
IIM version | 112 |
Keywords | Frontiers |
Image width | 490 px |
Image height | 1,012 px |
Width | 490 px |
Date metadata was last modified | 14:38, 1 November 2012 |
Rating (out of 5) | 0 |
Unique ID of original document | CE3B62166496048E512052E479C09BF6 |
Copyright status | Copyright status not set |