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Source: Front. Cell. Infect. Microbiol., 07 November 2012 | doi:10.3389/fcimb.2012.00133 Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli Susan R. Steyert, Jason W. Sahl, Claire M. Fraser, Louise D. Teel Flemming Scheutz and David A. Rasko

Figure 1. A whole genome phylogeny of nine LEE-negative (red) and four LEE-positive (blue) STEC compared in this study. Whole genome sequences for the LEE-negative STEC sequenced in this study (indicated by asterisks) was combined with sequence data obtained from GenBank for E. coli/Shigella genomes representing the major pathotypes (Table A1 in Appendix), and aligned based on concatenated regions of shared sequence as determined from analysis using Mugsy (Angiuoli and Salzberg, 2011). The phylogenetic tree was inferred with E. fergusonii isolate 35469 as the outgroup.
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Author Phylogeny Figures

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