File:Fitzhugh-nagumo b = 2.0, separatrix.png
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DescriptionFitzhugh-nagumo b = 2.0, separatrix.png |
English: ```python from matplotlib.widgets import AxesWidget import numpy as np import matplotlib.pyplot as plt from scipy.integrate import solve_ivp for alpha in [0.0]: # Define the parameter values a = 0.7 b = 2.0 # If b < 1.5, then there are stable loops. Else there are no loops. tau = 12.5 R = 0.1 I_ext_0 = (2/3 + (a-1)/b)/R I_ext_1 = (-2/3 + (a+1)/b)/R I_ext_min = min(I_ext_0, I_ext_1) - 2.0 / R I_ext_max = max(I_ext_0, I_ext_1) + 2.0 / R I_ext = I_ext_min * (alpha - 1.0)/(-2.0) + I_ext_max * (alpha + 1.0)/(+2.0) # If alpha < 1, then all trajectories fall to a stable equilibrium # If alpha > 1, and b < 1.5, then all trajectories fall to a stable loop. # Define the system of ODEs def system(t, y): v, w = y dv = v - (v ** 3) / 3 - w + R * I_ext dw = (1 / tau) * (v + a - b * w) return [-dv, -dw] vmin, vmax, wmin, wmax = -2, 2, -2+R*I_ext, 2+R*I_ext t_span = [0, 50] trajectory_resolution = 30 initial_conditions = [(x, y) for x in np.linspace(vmin, vmax, trajectory_resolution) for y in np.linspace(wmin, wmax, trajectory_resolution)] sols = {} for ic in initial_conditions: sols[ic] = solve_ivp(system, t_span, ic, dense_output=True, max_step=0.1) vs = np.linspace(vmin, vmax, 200) v_axis = np.linspace(vmin, vmax, 20) w_axis = np.linspace(wmin, wmax, 20) v_values, w_values = np.meshgrid(v_axis, w_axis) dv = v_values - (v_values ** 3) / 3 - w_values + R * I_ext dw = (1 / tau) * (v_values + a - b * w_values) fig, ax = plt.subplots(figsize=(16,16)) # integral curves for ic in initial_conditions: sol = sols[ic] ax.plot(sol.y[0], sol.y[1], color='k', alpha=0.4, linewidth=0.5) # vector fields arrow_lengths = np.sqrt(dv**2 + dw**2) alpha_values = 1 - (arrow_lengths / np.max(arrow_lengths))**0.4 ax.quiver(v_values, w_values, dv, dw, color='blue', linewidth=0.5, scale=25, alpha=alpha_values) # nullclines ax.plot(vs, vs - vs**3/3 + R * I_ext, color="green", alpha=0.4, label="v nullcline") ax.plot(vs, (vs + a) / b, color="red", alpha=0.4, label="w nullcline") # ax.set_xlabel('v') # ax.set_ylabel('w') ax.set_title(f'FitzHugh-Nagumo Model\n$b={b:.2f}$\t\t$I_{{ext}} = {I_ext:.2f}}}) # ax.legend() ax.set_xlim(vmin, vmax) ax.set_ylim(wmin, wmax) ax.set_xticks([]) ax.set_yticks([]) plt.show() ``` |
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Source | Own work |
Author | Cosmia Nebula |
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current | 01:47, 25 April 2023 | 1,260 × 1,297 (958 KB) | Cosmia Nebula (talk | contribs) | Uploaded while editing "FitzHugh–Nagumo model" on en.wikipedia.org |
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