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File:Maximum likelihood tree of 17 populations including Mlabri.png

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English: Maximum likelihood tree of populations and components. (A): Maximum likelihood tree of 17 populations, bootstrap values obtained by sampling 55,561 SNPs 100 times with replacements, only values less than 100 are shown. Colored population names (IDs) help recognize their linguistic affinities, yellow: Japonic, magenta: Sino-Tibetan, light-blue: Tai-Kadai, red: Austro-Asiatic. (B): Maximum likelihood tree of components inferred from STRUCTURE analysis (K = 8) Bootstrap values for B was obtained by randomly sampling cluster frequencies 100 times from STRUCTURE results. A maximum likelihood tree of populations, based on 55,561 SNPs showed that Mlabri (MA) and Htin (TN) have the closest relationship, and this topology was supported by 100% of bootstrap replicates (Figure A). The component tree was reconstructed based on allele frequencies in each cluster inferred from the STRUCTURE analysis (Figure B). We found that the Mlabri specific and Htin specific component clustered tightly on the tree (supported by 100% of bootstrap replicates), strongly indicating once again that the Mlabri share a more recent ancestry with the Htin than with any other group in our sample.
Date Published: 19 March 2010
Source Xu S, Kangwanpong D, Seielstad M, et al. Genetic evidence supports linguistic affinity of Mlabri - a hunter-gatherer group in Thailand. BMC Genetics. 2010;11:18. doi:10.1186/1471-2156-11-18. https://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156-11-18
Author Shuhua Xu, Daoroong Kangwanpong, Mark Seielstad, Metawee Srikummool, Jatupol Kampuansai, Li JinEmail author and The HUGO Pan-Asian SNP Consortium
Other versions
  • Expected heterozygosity
    Expected heterozygosity
  • Neighbor-Joining tree
    Neighbor-Joining tree
  • PCA plot
    PCA plot
  • Poopulation structure
    Poopulation structure
  • Maximum likelihood tree
    Maximum likelihood tree
  • Geographical distribution of Thailand population samples (Blue dot is Mlabri)
    Geographical distribution of Thailand population samples (Blue dot is Mlabri)
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