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File:Minimum Evolution-Tree Allbatrellaceae 25S-RNA.svg

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Evolutionary relationships of Albatrellaceae
Figure. Evolutionary relationships of taxa The evolutionary history was inferred using the Minimum Evolution method on the (partial) 25S rRNA gene. The optimal tree with the sum of branch length = 0.41327526 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site. The ME tree was searched using the Close-Neighbor-Interchange (CNI) algorithm at a search level of 1. The Neighbor-joining algorithm was used to generate the initial tree. The analysis involved 26 nucleotide sequences. All positions with less than 95% site coverage were eliminated. That is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position. There were a total of 863 positions in the final dataset. Evolutionary analyses were conducted in MEGA5. 

Evolutionary analyses were conducted in MEGA5. Exidia glandulosa strain EL3-99 AF506493 was used as outgroup. All sequences were obtained from the Genbank and were aligned by the CustalW algorithm with standard settings.

List of the GenBank Sequences.

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I, the copyright holder of this work, hereby publish it under the following license:
Creative Commons CC-Zero This file is made available under the Creative Commons CC0 1.0 Universal Public Domain Dedication.
The person who associated a work with this deed has dedicated the work to the public domain by waiving all of their rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law. You can copy, modify, distribute and perform the work, even for commercial purposes, all without asking permission.

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current19:29, 17 June 2013Thumbnail for version as of 19:29, 17 June 2013810 × 599 (30 KB)Thkgk (talk | contribs){{Information |Description='''Evolutionary relationships of Albatrellaceae'''<br/> Figure. Evolutionary relationships of taxa The evolutionary history was inferred using the Minimum Evolution method on the (partial) 25S rRNA gene. The optimal tree wit...

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