File:Odds ratio minsig.svg

Original file (SVG file, nominally 720 × 540 pixels, file size: 41 KB)

Captions

Captions

Add a one-line explanation of what this file represents

Summary

edit
Description
English: Graph showing the minimum value of the log odds ratio statistic that must be observed to be deemed significant at the 0.05 level, using the standard asymptotic hypothesis test. The three lines correspond to different values of the marginal probabilities in the 2x2 contingency table. The row and column marginal probabilities are held equal in this graph.
Date
Source Own work
Author Skbkekas
Permission
(Reusing this file)
I, the copyright holder of this work, hereby publish it under the following licenses:
w:en:Creative Commons
attribution share alike
This file is licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license.
You are free:
  • to share – to copy, distribute and transmit the work
  • to remix – to adapt the work
Under the following conditions:
  • attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
  • share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible license as the original.
GNU head Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in the section entitled GNU Free Documentation License.
You may select the license of your choice.
SVG development
InfoField
 
The SVG code is valid.
 
This plot was created with Matplotlib.
 
The file size of this SVG plot may be irrationally large because its text has been converted to paths inhibiting translations.
Source code
InfoField

Python code

import numpy as np
import matplotlib.pyplot as plt

## Sample sizes.
N = np.arange(10,201)

## Grid of log odds ratio and odds ratio values.
LOR = np.linspace(0.01,20,2000)
R = np.exp(LOR)

## Where to position the line labels.
x = {0.1: 20, 0.2: 40, 0.5: 60}

plt.clf()
for p in 0.1,0.2,0.5:

    ## Get the cell probabilities corresponding to each odds ratio R.
    S = np.sqrt((1+2*p*(R-1))**2 + 4*R*(1-R)*p**2)
    P11 = (1 + 2*p*(R-1) - S) / (2*(R-1))
    P10 = p-P11
    P01 = P10
    P00 = 1 - (P11+2*P10)

    ## The standard errors.
    SE = np.sqrt(1/P11 + 1/P10 + 1/P01 + 1/P00)

    ## Figure out which odds ratio gives a significant result.
    Q = []
    for n in N:
        ii = np.flatnonzero(LOR > 2*SE/np.sqrt(n))
        if len(ii)>0:
            Q.append([n,np.min(LOR[ii])])
    Q = np.array(Q)

    plt.plot(Q[:,0], Q[:,1], '-', color='orange', lw=3)

    jj = np.argmin(np.abs(Q[:,0]-x[p]))
    plt.text(x[p], Q[jj,1], "%.1f" % p, ha='center', va='center',\
            backgroundcolor='white')

plt.ylabel("Log odds ratio", size=18)
plt.xlabel("Sample size", size=18)
plt.grid(True)
plt.savefig("odds_ratio_minsig.pdf")
plt.savefig("odds_ratio_minsig.svg")

File history

Click on a date/time to view the file as it appeared at that time.

Date/TimeThumbnailDimensionsUserComment
current15:39, 10 November 2010Thumbnail for version as of 15:39, 10 November 2010720 × 540 (41 KB)Skbkekas (talk | contribs)Added a grid to make the graph easier to read.
15:34, 10 November 2010Thumbnail for version as of 15:34, 10 November 2010720 × 540 (38 KB)Skbkekas (talk | contribs){{Information |Description={{en|1=Graph showing the minimum value of the log odds ratio statistic that must be observed to be deemed significant at the 0.05 level, using the standard asymptotic hypothesis test.}} |Source={{own}} |Author=[[User:Skbkekas|Sk

There are no pages that use this file.

File usage on other wikis

The following other wikis use this file: